Material for book by Egeland, Kling and Mostad


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Documentation for package ‘BookEKM’ version 1.0

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BookEKM-package Various material for book authored by Egeland, Kling and Mostad
balance1 Makes Mutation Matrix Balanced
checkInput Likelihood for mixtures with related contributors based on 'paramlink'
conditionalLikelihoods Mixture likelihoods conditioned on genotypes
db Allele database
exampleKrakow Krakow homework
expectedCost Expected cost
generate Generates genotypes for unknown contributors
kappaMat Calulates IBD matrices
lambdaEst Linkage disequilibrium: Lambda estimate
lik.PO Likelihood for parent offspring for all geneotypes
LRimp Calculates LR exceedance probabilities
LRmoments2 Calculates expectation, standard deviation and skewness of LR under HP and HD
LRpair LR moments for pairs
mix3Familias Relationships with mixtures
moments Univariate and bivariate expectation and variance of LR
paraMix Likelihood for mixtures with related contributors based on 'paramlink'
q012 Probabilities for pairwise relationships
qkappa Calculates joint distribution for a pair of individals given IBD probabilities
simX Simulates and calculates LR for X - and autosomal markers
Table8.1 DNA profile